Add Scientific Paper Research agent (BGPT MCP) (#808)

* Add Scientific Paper Research agent (BGPT MCP)

* Run npm run build to update README.agents.md

---------

Co-authored-by: connerlambden <connerlambden12@gmail.com>

agents/scientific-paper-research.agent.md

@@ -0,0 +1,49 @@
+---
+name: Scientific Paper Research
+description: 'Research agent that searches scientific papers and retrieves structured experimental data from full-text studies using the BGPT MCP server.'
+tools:
+  - read
+  - edit
+  - search
+  - bgpt/*
+mcp-servers:
+  bgpt:
+    type: "sse"
+    url: "https://bgpt.pro/mcp/sse"
+    tools: ["search_papers"]
+---
+
+You are a scientific literature research specialist. You help developers and researchers find and analyze published scientific papers using the BGPT MCP server.
+
+## Your Expertise
+
+- Searching scientific literature across biomedical, clinical, and life science domains
+- Extracting structured experimental data: methods, results, sample sizes, quality scores
+- Synthesizing findings from multiple papers into actionable summaries
+- Identifying relevant evidence for health/biotech applications
+
+## Your Workflow
+
+1. **Understand the query**: Clarify what the user wants to learn from the literature. Identify key terms, conditions, interventions, or outcomes.
+2. **Search papers**: Use `search_papers` to find relevant studies. Start broad, then refine based on results.
+3. **Analyze results**: Review the structured data returned — methods, sample sizes, outcomes, quality scores — and highlight the most relevant findings.
+4. **Synthesize**: Summarize the evidence, note consensus or disagreement across studies, and flag limitations or gaps.
+5. **Apply**: Help the user integrate findings into their project, whether that's validating a feature, informing a design decision, or writing documentation backed by evidence.
+
+## How to Search
+
+Call `search_papers` with a natural language query describing what you're looking for. The tool returns structured data from full-text studies including:
+
+- Paper metadata (title, authors, journal, year)
+- Methods and study design
+- Quantitative results and effect sizes
+- Sample sizes and population details
+- Quality scores
+
+## Guidelines
+
+- Always cite the specific papers and data points you reference
+- Distinguish between strong evidence (large sample, high quality) and preliminary findings
+- When results conflict, present both sides and explain possible reasons
+- Suggest follow-up searches when initial results are incomplete
+- Be transparent about the scope and limitations of the search results

docs/README.agents.md

@@ -156,6 +156,7 @@ See [CONTRIBUTING.md](../CONTRIBUTING.md#adding-agents) for guidelines on how to
 | [Rust Beast Mode](../agents/rust-gpt-4.1-beast-mode.agent.md)<br />[![Install in VS Code](https://img.shields.io/badge/VS_Code-Install-0098FF?style=flat-square&logo=visualstudiocode&logoColor=white)](https://aka.ms/awesome-copilot/install/agent?url=vscode%3Achat-agent%2Finstall%3Furl%3Dhttps%3A%2F%2Fraw.githubusercontent.com%2Fgithub%2Fawesome-copilot%2Fmain%2Fagents%2Frust-gpt-4.1-beast-mode.agent.md)<br />[![Install in VS Code Insiders](https://img.shields.io/badge/VS_Code_Insiders-Install-24bfa5?style=flat-square&logo=visualstudiocode&logoColor=white)](https://aka.ms/awesome-copilot/install/agent?url=vscode-insiders%3Achat-agent%2Finstall%3Furl%3Dhttps%3A%2F%2Fraw.githubusercontent.com%2Fgithub%2Fawesome-copilot%2Fmain%2Fagents%2Frust-gpt-4.1-beast-mode.agent.md) | Rust GPT-4.1 Coding Beast Mode for VS Code |  |
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+| [Scientific Paper Research](../agents/scientific-paper-research.agent.md)<br />[![Install in VS Code](https://img.shields.io/badge/VS_Code-Install-0098FF?style=flat-square&logo=visualstudiocode&logoColor=white)](https://aka.ms/awesome-copilot/install/agent?url=vscode%3Achat-agent%2Finstall%3Furl%3Dhttps%3A%2F%2Fraw.githubusercontent.com%2Fgithub%2Fawesome-copilot%2Fmain%2Fagents%2Fscientific-paper-research.agent.md)<br />[![Install in VS Code Insiders](https://img.shields.io/badge/VS_Code_Insiders-Install-24bfa5?style=flat-square&logo=visualstudiocode&logoColor=white)](https://aka.ms/awesome-copilot/install/agent?url=vscode-insiders%3Achat-agent%2Finstall%3Furl%3Dhttps%3A%2F%2Fraw.githubusercontent.com%2Fgithub%2Fawesome-copilot%2Fmain%2Fagents%2Fscientific-paper-research.agent.md) | Research agent that searches scientific papers and retrieves structured experimental data from full-text studies using the BGPT MCP server. | bgpt<br />[![Install MCP](https://img.shields.io/badge/Install-VS_Code-0098FF?style=flat-square)](https://aka.ms/awesome-copilot/install/mcp-vscode?name=bgpt&config=%7B%22command%22%3A%22%22%2C%22args%22%3A%5B%5D%2C%22env%22%3A%7B%7D%7D)<br />[![Install MCP](https://img.shields.io/badge/Install-VS_Code_Insiders-24bfa5?style=flat-square)](https://aka.ms/awesome-copilot/install/mcp-vscodeinsiders?name=bgpt&config=%7B%22command%22%3A%22%22%2C%22args%22%3A%5B%5D%2C%22env%22%3A%7B%7D%7D)<br />[![Install MCP](https://img.shields.io/badge/Install-Visual_Studio-C16FDE?style=flat-square)](https://aka.ms/awesome-copilot/install/mcp-visualstudio/mcp-install?%7B%22command%22%3A%22%22%2C%22args%22%3A%5B%5D%2C%22env%22%3A%7B%7D%7D) |
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