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@@ -0,0 +1,130 @@
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---
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name: convert-pdf-to-md
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description: 'Converts PDF (.pdf) documents into Markdown so their contents can be accurately analyzed, summarized, searched, or extracted from. Use this skill whenever the user shares, references, or asks about a .pdf file — even if they don''t say "convert" or "markdown" explicitly. This includes requests to "read", "summarize", "review", "extract data from", "compare", or "analyze" a PDF report, paper, invoice, form, contract, or scanned document. Always run the bundled conversion script to produce Markdown first; do not attempt to parse PDF content directly or write ad-hoc extraction code. Also use this skill for batch requests involving a whole folder of PDF documents. IMPORTANT: When the user references a folder or set of documents containing multiple file types (.pdf, .docx, .xlsx), invoke ALL three sibling skills — convert-pdf-to-md, convert-word-to-md, and convert-excel-to-md — so no file type is silently skipped.'
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---
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# Convert PDF to Markdown
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## When to use this skill
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Trigger this skill any time there is a `.pdf` file that needs to be
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understood or processed — for example, a user attaches a PDF and asks
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questions about it, wants a summary, wants specific data or tables pulled
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out, or wants multiple PDFs in a folder processed together. PDF is a
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layout/print format, not reliably readable as plain text, so always convert
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it to Markdown first using the script in this skill rather than trying to
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open or parse the file directly.
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This skill only supports `.pdf` — that's MarkItDown's only PDF-family
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format, so there's no legacy format to worry about here (unlike Word's
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`.doc` or Excel's `.xls`).
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**Mixed file types:** When the user references a folder or set of documents
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containing multiple supported file types (`.pdf`, `.docx`, `.xlsx`), this
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skill handles only `.pdf` files. The agent MUST also invoke the sibling
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skills in parallel:
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- `convert-word-to-md` for any `.docx` files
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- `convert-excel-to-md` for any `.xlsx` files
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Never process a folder and silently skip a supported file type. All three
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skills must be invoked together when mixed types are present.
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## Setup (once per environment)
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Before the first conversion in a given environment, follow
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[`references/setup.md`](references/setup.md) step by step to ensure Python,
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pip, `markitdown`, and `pymupdf` (for image extraction) are installed. Do
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this proactively rather than guessing whether the environment is ready — the
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script itself will also fail with a clear pointer back to that file if a
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dependency turns out to be missing, so it's safe to just try the conversion
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first if you're reasonably confident setup was already done.
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## Usage
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The conversion script lives at `scripts/convert_pdf_to_md.py`.
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**Output structure:** MarkItDown's PDF converter extracts text and tables
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only — it has no concept of embedded images at all. This script separately
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extracts real embedded images via PyMuPDF and writes a self-contained folder
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per document:
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```
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<name>/
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img/
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page001_img001.<ext>
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page002_img001.<ext>
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...
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<name>.md
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```
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Because MarkItDown's PDF text does not preserve reliable per-page markers,
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there's no safe way to know exactly where inline an image belongs. Rather
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than risk misplacing images next to the wrong paragraph, the script appends
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a `## Extracted Images` section at the end of the Markdown, with a
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`### Page N` subheading per page that has images — read this section
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separately from the main body text. If the document has no embedded images,
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no `img/` folder or `Extracted Images` section is created.
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**Single file:**
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```powershell
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python scripts\convert_pdf_to_md.py "C:\path\to\document.pdf"
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```
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This creates a `document\` folder next to the source file (containing
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`document.md` and, if present, `document\img\`). To control the destination
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folder explicitly:
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```powershell
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python scripts\convert_pdf_to_md.py "C:\path\to\document.pdf" -o "C:\path\to\output_folder"
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```
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**A folder of PDFs (batch mode):**
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```powershell
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python scripts\convert_pdf_to_md.py "C:\path\to\folder"
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```
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Add `--recursive` to also include subfolders:
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```powershell
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python scripts\convert_pdf_to_md.py "C:\path\to\folder" --recursive
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```
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Each `.pdf` found gets its own `<name>\` output folder next to it by
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default. Pass `-o "C:\path\to\output_parent"` to collect all the generated
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`<name>\` folders under a separate parent directory instead (subfolder
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structure is preserved when combined with `--recursive`).
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After conversion, read the resulting `.md` file(s) to perform the actual
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analysis the user asked for — the script's job is only to produce accurate
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Markdown (and images), not to interpret the content.
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## Deciding where output goes
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**Default — always output next to the source file.** The `<name>/` folder
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is created in the same directory as the source `.pdf`. This is the required
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default for every case. Do NOT override it unless the user explicitly asks
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for a different location.
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**Only use `-o` when** the user explicitly provides an output path (e.g.,
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"save the output to `C:\output`", "put the results in `D:\work`"). Do NOT
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pass `-o` based on the agent's current working directory, the session state
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folder, or any implied location.
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**If the source file path cannot be fully resolved** — for example, the
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user provides only a filename with no directory, or the path is ambiguous —
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use `ask_user` to confirm the full absolute path before running the
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conversion. Never guess or assume the directory.
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## Troubleshooting
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| Symptom | Likely cause | Fix |
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|---|---|---|
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| `ModuleNotFoundError: No module named 'markitdown'` or `'fitz'` / exit code 2 | MarkItDown or PyMuPDF not installed | Follow `references/setup.md` |
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| `ERROR: Unsupported file type '...'` / exit code 3 | Not a `.pdf` file | Ask the user for the correct file, or if it's `.doc`/`.docx`/`.xlsx`, use the matching sibling skill instead |
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| `ERROR: Input path not found` / exit code 3 | Wrong path, or file moved | Confirm the correct path with the user |
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| `FAILED <file> -> ...` in batch output | That specific file is corrupt, password-protected, or otherwise unreadable | Report which file(s) failed; other files in the batch still succeed |
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| `NOTE: skipped N non-.pdf file(s)` | Folder contains non-PDF files | Expected — those files are intentionally ignored |
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| Markdown body is empty or near-empty despite images being extracted | The PDF is scanned/image-only with no embedded text layer; MarkItDown does not perform OCR | Tell the user OCR isn't supported — the extracted page images are still available for them to view |
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| Images appear in an appendix instead of inline with the text | Deliberate limitation — MarkItDown's PDF text has no reliable per-page markers to place images inline | Expected behavior; cross-reference the `### Page N` heading with the surrounding text context if needed |
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@@ -0,0 +1,71 @@
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# Environment Setup for convert-pdf-to-md
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Follow these steps exactly, in order, before running `scripts/convert_pdf_to_md.py`
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for the first time in a given environment. Don't skip steps or improvise
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alternatives — they're written to be deterministic and safe to re-run.
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## 1. Check Python is available (3.10+)
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```powershell
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python --version
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```
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- If this fails (command not found), install Python 3.10 or newer:
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- Windows: `winget install --id Python.Python.3.12 -e`
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- macOS: `brew install python@3.12`
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- Linux (Debian/Ubuntu): `sudo apt-get update && sudo apt-get install -y python3 python3-pip python-is-python3`
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- If the reported version is older than 3.10, install a newer Python using
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the same command above (MarkItDown requires 3.10+).
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## 2. Check pip is available
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```powershell
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python -m pip --version
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```
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- If this fails, bootstrap pip:
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```powershell
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python -m ensurepip --upgrade
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```
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## 3. Install MarkItDown with PDF support, plus PyMuPDF for image extraction
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Use the `scripts/requirements.txt` file bundled with this skill to install pinned,
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known-good versions of the dependencies:
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```powershell
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python -m pip install -r scripts/requirements.txt
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```
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This pulls in `markitdown[pdf]` and `pymupdf>=1.24.0`. PyMuPDF (imported as `fitz`)
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is required separately because MarkItDown's PDF
|
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converter only extracts text and tables — it has no support for embedded
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images at all, so this skill's script extracts them itself.
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## 4. Verify the install
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||||
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```powershell
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python -c "from markitdown import MarkItDown; import fitz; print('markitdown + pymupdf OK')"
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```
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Expect to see `markitdown + pymupdf OK` printed with no errors. If you see a
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`ModuleNotFoundError`, repeat step 3 — pip may be installing into a
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different Python environment than the one being invoked (check
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`python -m pip --version` shows the same path as `python --version`'s
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interpreter).
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## Notes
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- This setup only needs to be done once per environment/virtual environment,
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not once per conversion.
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- `convert_pdf_to_md.py` itself also checks for `markitdown` and `fitz` at
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startup and prints a pointer back to this file if either is missing, so
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re-running setup is safe and idempotent.
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- Only `.pdf` is supported by this skill — it's MarkItDown's only PDF-family
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format, so there's no legacy-format equivalent to worry about (unlike
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Word's `.doc` or Excel's `.xls`).
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- Scanned/image-only PDFs (no embedded text layer) will produce little or
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||||
no text from MarkItDown, since it does not perform OCR. The images
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themselves will still be extracted and appended, but the text body may be
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empty or near-empty in that case — mention this to the user if it happens.
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@@ -0,0 +1,321 @@
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#!/usr/bin/env python3
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"""Convert PDF documents to Markdown using Microsoft's MarkItDown, with
|
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embedded images extracted to real files via PyMuPDF (MarkItDown's PDF
|
||||
converter only extracts text/tables -- it does not detect or emit anything
|
||||
for embedded images at all).
|
||||
|
||||
Usage:
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python convert_pdf_to_md.py <input> [-o OUTPUT] [--recursive]
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||||
|
||||
<input> may be either:
|
||||
- a path to a single .pdf file, or
|
||||
- a path to a directory (batch mode: every .pdf file directly inside it
|
||||
is converted; pass --recursive to also descend into subdirectories).
|
||||
|
||||
Output:
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For each source .pdf (named "<name>.pdf"), a folder is created containing
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the Markdown and its images, in this layout:
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||||
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<name>/
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img/
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page001_img001.<ext>
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page001_img002.<ext>
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page002_img001.<ext>
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||||
...
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<name>.md
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|
||||
IMPORTANT: MarkItDown's PDF text extraction does not preserve reliable
|
||||
per-page markers in the returned Markdown (pages are simply joined
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||||
together, or in some cases returned as a single unmarked block of text).
|
||||
That means there is no safe way to know exactly where, inline, an image
|
||||
should go. Rather than guess and risk misplacing an image next to the
|
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wrong paragraph, this script appends a clearly labeled "## Extracted
|
||||
Images" section at the end of the Markdown, with a "### Page N"
|
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subheading per page that contains images. This is a deliberate, honest
|
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tradeoff -- read the images section separately from the main body text.
|
||||
|
||||
- Single file mode: the "<name>/" folder is created next to the source
|
||||
file, or at -o/--output (treated as the exact destination folder) if
|
||||
given.
|
||||
- Batch/directory mode: a "<name>/" folder is created next to each source
|
||||
file, or under -o/--output (treated as a parent directory, created if
|
||||
missing) if given, preserving relative subfolder structure when
|
||||
--recursive is used.
|
||||
- If a document has no embedded images, no "img/" folder or "Extracted
|
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Images" section is created.
|
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|
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Exit codes:
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0 - all requested conversions succeeded
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1 - one or more conversions failed (partial success in batch mode)
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2 - a required dependency ("markitdown" or "pymupdf") is not installed
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3 - invalid input (path not found, or single-file input is not .pdf)
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"""
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import argparse
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import sys
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import hashlib
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import shutil
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from pathlib import Path
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EXIT_OK = 0
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EXIT_CONVERSION_FAILED = 1
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EXIT_MISSING_DEPENDENCY = 2
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EXIT_INVALID_INPUT = 3
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|
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|
||||
def _import_markitdown():
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"""Import MarkItDown, failing with a clear, actionable message if absent."""
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try:
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from markitdown import MarkItDown
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return MarkItDown
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||||
except ImportError:
|
||||
print(
|
||||
"ERROR: The 'markitdown' package is not installed.\n"
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||||
"See references/setup.md for this skill, or run:\n"
|
||||
' pip install "markitdown[pdf]"',
|
||||
file=sys.stderr,
|
||||
)
|
||||
sys.exit(EXIT_MISSING_DEPENDENCY)
|
||||
|
||||
|
||||
def _import_fitz():
|
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"""Import PyMuPDF (module name 'fitz'), failing with a clear message if absent."""
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try:
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import fitz
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import hashlib
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return fitz
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||||
except ImportError:
|
||||
print(
|
||||
"ERROR: The 'pymupdf' package is not installed (needed for image "
|
||||
"extraction).\nSee references/setup.md for this skill, or run:\n"
|
||||
" pip install pymupdf",
|
||||
file=sys.stderr,
|
||||
)
|
||||
sys.exit(EXIT_MISSING_DEPENDENCY)
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||||
|
||||
|
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def extract_images(fitz, pdf_path: Path, img_dir: Path):
|
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"""Extract embedded images from pdf_path, grouped by 1-based page number.
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||||
Returns {page_num: [filename, ...]} in per-page image order. Files are
|
||||
named 'page{P:03d}_img{N:03d}.<ext>'. Corrupt/unreadable images are
|
||||
skipped with a warning rather than aborting the whole conversion.
|
||||
|
||||
Two sources are combined and deduplicated:
|
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1. Image XObjects via page.get_images(full=True) -- covers most embedded
|
||||
images in modern PDFs.
|
||||
2. Inline image blocks via page.get_text("dict") -- covers images stored
|
||||
directly in the page content stream, which get_images() misses entirely.
|
||||
Deduplication is by image bytes hash so the same raster is never written twice
|
||||
on the same page regardless of which source reported it."""
|
||||
written_by_page = {}
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||||
try:
|
||||
doc = fitz.open(str(pdf_path))
|
||||
except Exception as exc: # noqa: BLE001
|
||||
print(f"WARNING: could not open {pdf_path} for image extraction: {exc}", file=sys.stderr)
|
||||
return written_by_page
|
||||
|
||||
try:
|
||||
for page_index in range(len(doc)):
|
||||
page = doc[page_index]
|
||||
page_label = page_index + 1
|
||||
seen_hashes: set = set()
|
||||
raw_images: list[tuple[bytes, str]] = [] # (image_bytes, ext)
|
||||
|
||||
# --- Source 1: XObject images ---
|
||||
try:
|
||||
xobjects = page.get_images(full=True)
|
||||
except Exception as exc: # noqa: BLE001
|
||||
print(
|
||||
f"WARNING: failed to enumerate XObject images on page {page_label} "
|
||||
f"of {pdf_path}: {exc}",
|
||||
file=sys.stderr,
|
||||
)
|
||||
xobjects = []
|
||||
|
||||
for img in xobjects:
|
||||
xref = img[0]
|
||||
try:
|
||||
base_image = doc.extract_image(xref)
|
||||
except Exception as exc: # noqa: BLE001
|
||||
print(
|
||||
f"WARNING: failed to extract XObject image xref={xref} on page "
|
||||
f"{page_label} of {pdf_path}: {exc}",
|
||||
file=sys.stderr,
|
||||
)
|
||||
continue
|
||||
img_bytes = base_image.get("image") or b""
|
||||
if not img_bytes:
|
||||
continue
|
||||
ext = (base_image.get("ext") or "png").lower()
|
||||
raw_images.append((img_bytes, ext))
|
||||
|
||||
# --- Source 2: Inline images via get_text("dict") ---
|
||||
try:
|
||||
blocks = page.get_text("dict", flags=fitz.TEXT_PRESERVE_IMAGES).get("blocks", [])
|
||||
except Exception as exc: # noqa: BLE001
|
||||
print(
|
||||
f"WARNING: failed to extract text/image dict on page {page_label} "
|
||||
f"of {pdf_path}: {exc}",
|
||||
file=sys.stderr,
|
||||
)
|
||||
blocks = []
|
||||
|
||||
for block in blocks:
|
||||
# Image blocks have type == 1
|
||||
if block.get("type") != 1:
|
||||
continue
|
||||
img_bytes = block.get("image") or b""
|
||||
if not img_bytes:
|
||||
continue
|
||||
# Derive extension from the block's "ext" key (fitz sets this)
|
||||
ext = (block.get("ext") or "png").lower()
|
||||
raw_images.append((img_bytes, ext))
|
||||
|
||||
# --- Write deduplicated images ---
|
||||
page_files = []
|
||||
img_idx = 1
|
||||
for img_bytes, ext in raw_images:
|
||||
h = hashlib.sha256(img_bytes).digest()
|
||||
if h in seen_hashes:
|
||||
continue
|
||||
seen_hashes.add(h)
|
||||
out_name = f"page{page_label:03d}_img{img_idx:03d}.{ext}"
|
||||
img_dir.mkdir(parents=True, exist_ok=True)
|
||||
(img_dir / out_name).write_bytes(img_bytes)
|
||||
page_files.append(out_name)
|
||||
img_idx += 1
|
||||
|
||||
if page_files:
|
||||
written_by_page[page_label] = page_files
|
||||
finally:
|
||||
doc.close()
|
||||
|
||||
return written_by_page
|
||||
|
||||
|
||||
def build_image_appendix(written_by_page) -> str:
|
||||
"""Build the '## Extracted Images' appendix text. Returns "" if empty."""
|
||||
if not written_by_page:
|
||||
return ""
|
||||
lines = ["", "## Extracted Images", ""]
|
||||
for page_num in sorted(written_by_page):
|
||||
lines.append(f"### Page {page_num}")
|
||||
lines.append("")
|
||||
for name in written_by_page[page_num]:
|
||||
lines.append(f"")
|
||||
lines.append("")
|
||||
return "\n".join(lines).rstrip() + "\n"
|
||||
|
||||
|
||||
def convert_one(md, fitz, source: Path, dest_dir: Path) -> bool:
|
||||
"""Convert a single .pdf file to a '<name>/' folder containing the
|
||||
Markdown file and an 'img/' folder of extracted images. Returns True on
|
||||
success."""
|
||||
try:
|
||||
result = md.convert(str(source))
|
||||
except Exception as exc: # noqa: BLE001 - surface any conversion error
|
||||
print(f"FAILED {source} -> {exc}", file=sys.stderr)
|
||||
return False
|
||||
|
||||
try:
|
||||
if dest_dir.exists():
|
||||
shutil.rmtree(dest_dir)
|
||||
dest_dir.mkdir(parents=True, exist_ok=True)
|
||||
written_by_page = extract_images(fitz, source, dest_dir / "img")
|
||||
appendix = build_image_appendix(written_by_page)
|
||||
text = result.text_content.rstrip("\n")
|
||||
full_text = f"{text}\n{appendix}" if appendix else f"{text}\n"
|
||||
md_path = dest_dir / f"{source.stem}.md"
|
||||
md_path.write_text(full_text, encoding="utf-8")
|
||||
except OSError as exc:
|
||||
print(f"FAILED {source} -> could not write output in {dest_dir}: {exc}", file=sys.stderr)
|
||||
return False
|
||||
|
||||
img_count = sum(len(v) for v in written_by_page.values())
|
||||
img_note = f", {img_count} image(s)" if img_count else ""
|
||||
print(f"OK {source} -> {md_path}{img_note}")
|
||||
return True
|
||||
|
||||
|
||||
def find_pdf_files(root: Path, recursive: bool):
|
||||
"""Return (pdf_files, skipped_count) for files directly/recursively under root."""
|
||||
pattern_iter = root.rglob("*") if recursive else root.iterdir()
|
||||
pdf_files = []
|
||||
skipped = 0
|
||||
for entry in pattern_iter:
|
||||
if entry.is_dir():
|
||||
continue
|
||||
if entry.suffix.lower() == ".pdf":
|
||||
pdf_files.append(entry)
|
||||
else:
|
||||
skipped += 1
|
||||
return sorted(pdf_files), skipped
|
||||
|
||||
|
||||
def main() -> int:
|
||||
parser = argparse.ArgumentParser(description=__doc__.splitlines()[0])
|
||||
parser.add_argument("input", help="Path to a .pdf file or a directory of .pdf files")
|
||||
parser.add_argument(
|
||||
"-o", "--output",
|
||||
help=(
|
||||
"Destination folder for the '<name>/' output (single-file mode), "
|
||||
"or parent directory under which each '<name>/' output folder is "
|
||||
"created (batch mode)"
|
||||
),
|
||||
)
|
||||
parser.add_argument(
|
||||
"--recursive", action="store_true",
|
||||
help="When input is a directory, also search subdirectories",
|
||||
)
|
||||
args = parser.parse_args()
|
||||
|
||||
#MarkItDown = _import_markitdown()
|
||||
#fitz = _import_fitz()
|
||||
#md = MarkItDown()
|
||||
|
||||
source = Path(args.input)
|
||||
if not source.exists():
|
||||
print(f"ERROR: Input path not found: {source}", file=sys.stderr)
|
||||
return EXIT_INVALID_INPUT
|
||||
|
||||
if source.is_file() and source.suffix.lower() != ".pdf":
|
||||
print(
|
||||
f"ERROR: Unsupported file type '{source.suffix}'. "
|
||||
"This skill only converts .pdf files.",
|
||||
file=sys.stderr,
|
||||
)
|
||||
return EXIT_INVALID_INPUT
|
||||
|
||||
MarkItDown = _import_markitdown()
|
||||
fitz = _import_fitz()
|
||||
md = MarkItDown()
|
||||
|
||||
if source.is_file():
|
||||
dest_dir = Path(args.output) if args.output else source.parent / source.stem
|
||||
return EXIT_OK if convert_one(md, fitz, source, dest_dir) else EXIT_CONVERSION_FAILED
|
||||
|
||||
# Directory / batch mode
|
||||
pdf_files, skipped = find_pdf_files(source, args.recursive)
|
||||
if skipped:
|
||||
print(f"NOTE: skipped {skipped} non-.pdf file(s) in {source}")
|
||||
if not pdf_files:
|
||||
print(f"ERROR: No .pdf files found under {source}", file=sys.stderr)
|
||||
return EXIT_INVALID_INPUT
|
||||
|
||||
out_dir = Path(args.output) if args.output else None
|
||||
success_count = 0
|
||||
for pdf_path in pdf_files:
|
||||
if out_dir is not None:
|
||||
rel = pdf_path.relative_to(source)
|
||||
dest_dir = out_dir / rel.parent / pdf_path.stem
|
||||
else:
|
||||
dest_dir = pdf_path.parent / pdf_path.stem
|
||||
if convert_one(md, fitz, pdf_path, dest_dir):
|
||||
success_count += 1
|
||||
|
||||
total = len(pdf_files)
|
||||
print(f"\nConverted {success_count}/{total} file(s).")
|
||||
return EXIT_OK if success_count == total else EXIT_CONVERSION_FAILED
|
||||
|
||||
|
||||
if __name__ == "__main__":
|
||||
sys.exit(main())
|
||||
@@ -0,0 +1,2 @@
|
||||
markitdown[pdf]>=0.1.0
|
||||
pymupdf>=1.24.0
|
||||
Reference in New Issue
Block a user