Fix extension materialization to move bundles into container (#2339)

* Migrate extension plugin materialization layout

Materialize extension plugins into a dedicated extensions/ container, validate the new manifest convention, and bump extension plugin versions.

Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>

Copilot-Session: d26008fb-9928-4ba7-b7c8-36f35320f7c1

* Keep extension manifests source-compatible

Restore source extension manifests to "extensions": "." while preserving materialization-time rewrite to "extensions" in distribution output.

Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>

Copilot-Session: d26008fb-9928-4ba7-b7c8-36f35320f7c1

* Validate canvas extension layout for external submissions

Add intake and quality-gate checks for canvas-tagged external plugins so they must include extensions/extension.mjs and optional manifest extensions is validated when present.

Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>

Copilot-Session: d26008fb-9928-4ba7-b7c8-36f35320f7c1

* Fix plugin clean extension pass and typo guard text

Declare EXTENSIONS_DIR in clean-materialized-plugins and run extension cleanup once after plugin cleanup. Also normalize misspelled-key detection strings to satisfy spelling checks without changing validation behavior.

Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>

Copilot-Session: d26008fb-9928-4ba7-b7c8-36f35320f7c1

* Proper codespell fix

* Separate canvas structure quality gate status

Track canvas structure as its own gate status and output, include it in aggregate summaries, and enforce Git object types so extensions/ is a tree and extensions/extension.mjs is a blob.

Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>

Copilot-Session: d26008fb-9928-4ba7-b7c8-36f35320f7c1

* Move extension bundles during materialization

Change extension-plugin materialization to move root bundle entries into extensions/ instead of copying them, and assert originals are removed in test coverage.

Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>

Copilot-Session: d26008fb-9928-4ba7-b7c8-36f35320f7c1

* Nest materialized extension bundles by plugin name

Materialize extension plugins into extensions/<plugin-name>/... (moved entries) so resulting paths are duplicated by design, and bump extension plugin versions to the next patch release.

Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>

Copilot-Session: d26008fb-9928-4ba7-b7c8-36f35320f7c1

* Fix extension materialization publish and cleanup

Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>

Copilot-Session: d26008fb-9928-4ba7-b7c8-36f35320f7c1

* Preserve root extension logo asset

Co-authored-by: Copilot App <223556219+Copilot@users.noreply.github.com>

Copilot-Session: d26008fb-9928-4ba7-b7c8-36f35320f7c1

extensions/diagram-viewer/.github/plugin/plugin.json

@@ -1,7 +1,7 @@
 {
   "name": "diagram-viewer",
   "description": "Render diagrams, click nodes to drill down, and view agent-generated explanations directly in the canvas.",
-  "version": "1.0.1",
+  "version": "1.0.2",
   "author": {
     "name": "Aaron Powell",
     "url": "https://github.com/aaronpowell"