From a86b2739b40df280a7e6cc18eb4806e7c7aa2cff Mon Sep 17 00:00:00 2001 From: SelfPy <65017553+SelfPy@users.noreply.github.com> Date: Sun, 17 May 2026 18:15:39 +0300 Subject: [PATCH 1/4] Add Science AI MCP server to README Added a new MCP server for academic peer-review and research workflow tools from Science AI Journal. --- README.md | 1 + 1 file changed, 1 insertion(+) diff --git a/README.md b/README.md index a58a33b32..9e2a7ca6c 100644 --- a/README.md +++ b/README.md @@ -1946,6 +1946,7 @@ Tools for conducting research, surveys, interviews, and data collection. - [xmpuspus/ph-civic-data-mcp](https://github.com/xmpuspus/ph-civic-data-mcp) [![xmpuspus/ph-civic-data-mcp MCP server](https://glama.ai/mcp/servers/xmpuspus/ph-civic-data-mcp/badges/score.svg)](https://glama.ai/mcp/servers/xmpuspus/ph-civic-data-mcp) 🐍 ☁️ 🍎 🪟 🐧 - Philippine government data as agent-callable tools: PHIVOLCS earthquakes + volcano alerts, PAGASA weather + typhoons, PhilGEPS procurement, PSA 2020 Census population + poverty, AQICN air quality. Install: `uvx ph-civic-data-mcp`. - [yusong652/pfc-mcp](https://github.com/yusong652/pfc-mcp) [![pfc-mcp MCP server](https://glama.ai/mcp/servers/yusong652/pfc-mcp/badges/score.svg)](https://glama.ai/mcp/servers/yusong652/pfc-mcp) 🐍 🏠 🪟 - MCP server for [ITASCA PFC](https://www.itascacg.com/software/pfc) discrete element simulation — browse documentation, execute scripts, capture plots, and manage long-running tasks via a WebSocket bridge to the PFC GUI. - [yusong652/yade-mcp](https://github.com/yusong652/yade-mcp) [![yade-mcp MCP server](https://glama.ai/mcp/servers/yusong652/yade-mcp/badges/score.svg)](https://glama.ai/mcp/servers/yusong652/yade-mcp) 🐍 🏠 🐧 - MCP server for [YADE](https://yade-dem.org/) — open-source discrete element method (DEM) engine for granular and particle simulation. Browse API docs with BM25 search, execute code via synchronous REPL or async background tasks, monitor progress, and review task history. +- [science-ai-mcp-server](https://www.npmjs.com/package/science-ai-mcp-server) 📇 ☁️ - Academic peer-review and research workflow tools from [Science AI Journal](https://scienceaijournal.com): Pre-Check (paper-tier prediction), HAKEM AI peer review, Research Gaps Finder, Journal Recommender (1,214 venues with predatory-journal flags), Duplicate Publication Checker (CrossRef/arXiv/medRxiv/bioRxiv/Unpaywall/900k-paper library), and the Article Writer pipeline. Free local tools (FTS5, zero LLM cost); LLM tools use caller account credits. ### 🔎 end to end RAG platforms From ea428cd250453219e113a1c6df38f5cbe4563c83 Mon Sep 17 00:00:00 2001 From: Gazelsoft Date: Mon, 18 May 2026 06:47:20 +0000 Subject: [PATCH 2/4] Use GitHub URL for science-ai-mcp-server entry Per maintainer bot feedback on #6503: replace the npm URL with the canonical GitHub source repo. The Glama badge will be added in a follow-up commit once the server is indexed by Glama. --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 9e2a7ca6c..692f123c7 100644 --- a/README.md +++ b/README.md @@ -1946,7 +1946,7 @@ Tools for conducting research, surveys, interviews, and data collection. - [xmpuspus/ph-civic-data-mcp](https://github.com/xmpuspus/ph-civic-data-mcp) [![xmpuspus/ph-civic-data-mcp MCP server](https://glama.ai/mcp/servers/xmpuspus/ph-civic-data-mcp/badges/score.svg)](https://glama.ai/mcp/servers/xmpuspus/ph-civic-data-mcp) 🐍 ☁️ 🍎 🪟 🐧 - Philippine government data as agent-callable tools: PHIVOLCS earthquakes + volcano alerts, PAGASA weather + typhoons, PhilGEPS procurement, PSA 2020 Census population + poverty, AQICN air quality. Install: `uvx ph-civic-data-mcp`. - [yusong652/pfc-mcp](https://github.com/yusong652/pfc-mcp) [![pfc-mcp MCP server](https://glama.ai/mcp/servers/yusong652/pfc-mcp/badges/score.svg)](https://glama.ai/mcp/servers/yusong652/pfc-mcp) 🐍 🏠 🪟 - MCP server for [ITASCA PFC](https://www.itascacg.com/software/pfc) discrete element simulation — browse documentation, execute scripts, capture plots, and manage long-running tasks via a WebSocket bridge to the PFC GUI. - [yusong652/yade-mcp](https://github.com/yusong652/yade-mcp) [![yade-mcp MCP server](https://glama.ai/mcp/servers/yusong652/yade-mcp/badges/score.svg)](https://glama.ai/mcp/servers/yusong652/yade-mcp) 🐍 🏠 🐧 - MCP server for [YADE](https://yade-dem.org/) — open-source discrete element method (DEM) engine for granular and particle simulation. Browse API docs with BM25 search, execute code via synchronous REPL or async background tasks, monitor progress, and review task history. -- [science-ai-mcp-server](https://www.npmjs.com/package/science-ai-mcp-server) 📇 ☁️ - Academic peer-review and research workflow tools from [Science AI Journal](https://scienceaijournal.com): Pre-Check (paper-tier prediction), HAKEM AI peer review, Research Gaps Finder, Journal Recommender (1,214 venues with predatory-journal flags), Duplicate Publication Checker (CrossRef/arXiv/medRxiv/bioRxiv/Unpaywall/900k-paper library), and the Article Writer pipeline. Free local tools (FTS5, zero LLM cost); LLM tools use caller account credits. +- [SelfPy/science-ai-mcp-server](https://github.com/SelfPy/science-ai-mcp-server) 📇 ☁️ - Academic peer-review and research workflow tools from [Science AI Journal](https://scienceaijournal.com): Pre-Check (paper-tier prediction), HAKEM AI peer review, Research Gaps Finder, Journal Recommender (1,214 venues with predatory-journal flags), Duplicate Publication Checker (CrossRef/arXiv/medRxiv/bioRxiv/Unpaywall/900k-paper library), and the Article Writer pipeline. Free local tools (FTS5, zero LLM cost); LLM tools use caller account credits. ### 🔎 end to end RAG platforms From 105e838481939ffb84b1ca79c32eb0f8721a227d Mon Sep 17 00:00:00 2001 From: Gazelsoft Date: Mon, 18 May 2026 07:18:24 +0000 Subject: [PATCH 3/4] Add Glama score badge for science-ai-mcp-server Glama approved the listing at 2026-05-18 10:05 (~30 min after submission). Adding the badge between the entry title and emoji icons matches the format of every other research-category entry on this list. Both URLs verified live: HTTP 200 on https://glama.ai/mcp/servers/SelfPy/science-ai-mcp-server and the badges/score.svg endpoint. --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 692f123c7..41ef3c62e 100644 --- a/README.md +++ b/README.md @@ -1946,7 +1946,7 @@ Tools for conducting research, surveys, interviews, and data collection. - [xmpuspus/ph-civic-data-mcp](https://github.com/xmpuspus/ph-civic-data-mcp) [![xmpuspus/ph-civic-data-mcp MCP server](https://glama.ai/mcp/servers/xmpuspus/ph-civic-data-mcp/badges/score.svg)](https://glama.ai/mcp/servers/xmpuspus/ph-civic-data-mcp) 🐍 ☁️ 🍎 🪟 🐧 - Philippine government data as agent-callable tools: PHIVOLCS earthquakes + volcano alerts, PAGASA weather + typhoons, PhilGEPS procurement, PSA 2020 Census population + poverty, AQICN air quality. Install: `uvx ph-civic-data-mcp`. - [yusong652/pfc-mcp](https://github.com/yusong652/pfc-mcp) [![pfc-mcp MCP server](https://glama.ai/mcp/servers/yusong652/pfc-mcp/badges/score.svg)](https://glama.ai/mcp/servers/yusong652/pfc-mcp) 🐍 🏠 🪟 - MCP server for [ITASCA PFC](https://www.itascacg.com/software/pfc) discrete element simulation — browse documentation, execute scripts, capture plots, and manage long-running tasks via a WebSocket bridge to the PFC GUI. - [yusong652/yade-mcp](https://github.com/yusong652/yade-mcp) [![yade-mcp MCP server](https://glama.ai/mcp/servers/yusong652/yade-mcp/badges/score.svg)](https://glama.ai/mcp/servers/yusong652/yade-mcp) 🐍 🏠 🐧 - MCP server for [YADE](https://yade-dem.org/) — open-source discrete element method (DEM) engine for granular and particle simulation. Browse API docs with BM25 search, execute code via synchronous REPL or async background tasks, monitor progress, and review task history. -- [SelfPy/science-ai-mcp-server](https://github.com/SelfPy/science-ai-mcp-server) 📇 ☁️ - Academic peer-review and research workflow tools from [Science AI Journal](https://scienceaijournal.com): Pre-Check (paper-tier prediction), HAKEM AI peer review, Research Gaps Finder, Journal Recommender (1,214 venues with predatory-journal flags), Duplicate Publication Checker (CrossRef/arXiv/medRxiv/bioRxiv/Unpaywall/900k-paper library), and the Article Writer pipeline. Free local tools (FTS5, zero LLM cost); LLM tools use caller account credits. +- [SelfPy/science-ai-mcp-server](https://github.com/SelfPy/science-ai-mcp-server) [![SelfPy/science-ai-mcp-server MCP server](https://glama.ai/mcp/servers/SelfPy/science-ai-mcp-server/badges/score.svg)](https://glama.ai/mcp/servers/SelfPy/science-ai-mcp-server) 📇 ☁️ - Academic peer-review and research workflow tools from [Science AI Journal](https://scienceaijournal.com): Pre-Check (paper-tier prediction), HAKEM AI peer review, Research Gaps Finder, Journal Recommender (1,214 venues with predatory-journal flags), Duplicate Publication Checker (CrossRef/arXiv/medRxiv/bioRxiv/Unpaywall/900k-paper library), and the Article Writer pipeline. Free local tools (FTS5, zero LLM cost); LLM tools use caller account credits. ### 🔎 end to end RAG platforms From 0c37643774857a04754e5f45d0a312f2b05fe51e Mon Sep 17 00:00:00 2001 From: Gazelsoft Date: Mon, 18 May 2026 07:25:12 +0000 Subject: [PATCH 4/4] Use English "AI multi-agent peer review" instead of Turkish "HAKEM" MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit Author asked to keep the package's user-facing copy English-only. The corresponding tool was also renamed `hakem_review_paper` → `ai_review_paper` upstream (commit 5a9426c in SelfPy/science-ai-mcp-server). --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 41ef3c62e..5cc0811ad 100644 --- a/README.md +++ b/README.md @@ -1946,7 +1946,7 @@ Tools for conducting research, surveys, interviews, and data collection. - [xmpuspus/ph-civic-data-mcp](https://github.com/xmpuspus/ph-civic-data-mcp) [![xmpuspus/ph-civic-data-mcp MCP server](https://glama.ai/mcp/servers/xmpuspus/ph-civic-data-mcp/badges/score.svg)](https://glama.ai/mcp/servers/xmpuspus/ph-civic-data-mcp) 🐍 ☁️ 🍎 🪟 🐧 - Philippine government data as agent-callable tools: PHIVOLCS earthquakes + volcano alerts, PAGASA weather + typhoons, PhilGEPS procurement, PSA 2020 Census population + poverty, AQICN air quality. Install: `uvx ph-civic-data-mcp`. - [yusong652/pfc-mcp](https://github.com/yusong652/pfc-mcp) [![pfc-mcp MCP server](https://glama.ai/mcp/servers/yusong652/pfc-mcp/badges/score.svg)](https://glama.ai/mcp/servers/yusong652/pfc-mcp) 🐍 🏠 🪟 - MCP server for [ITASCA PFC](https://www.itascacg.com/software/pfc) discrete element simulation — browse documentation, execute scripts, capture plots, and manage long-running tasks via a WebSocket bridge to the PFC GUI. - [yusong652/yade-mcp](https://github.com/yusong652/yade-mcp) [![yade-mcp MCP server](https://glama.ai/mcp/servers/yusong652/yade-mcp/badges/score.svg)](https://glama.ai/mcp/servers/yusong652/yade-mcp) 🐍 🏠 🐧 - MCP server for [YADE](https://yade-dem.org/) — open-source discrete element method (DEM) engine for granular and particle simulation. Browse API docs with BM25 search, execute code via synchronous REPL or async background tasks, monitor progress, and review task history. -- [SelfPy/science-ai-mcp-server](https://github.com/SelfPy/science-ai-mcp-server) [![SelfPy/science-ai-mcp-server MCP server](https://glama.ai/mcp/servers/SelfPy/science-ai-mcp-server/badges/score.svg)](https://glama.ai/mcp/servers/SelfPy/science-ai-mcp-server) 📇 ☁️ - Academic peer-review and research workflow tools from [Science AI Journal](https://scienceaijournal.com): Pre-Check (paper-tier prediction), HAKEM AI peer review, Research Gaps Finder, Journal Recommender (1,214 venues with predatory-journal flags), Duplicate Publication Checker (CrossRef/arXiv/medRxiv/bioRxiv/Unpaywall/900k-paper library), and the Article Writer pipeline. Free local tools (FTS5, zero LLM cost); LLM tools use caller account credits. +- [SelfPy/science-ai-mcp-server](https://github.com/SelfPy/science-ai-mcp-server) [![SelfPy/science-ai-mcp-server MCP server](https://glama.ai/mcp/servers/SelfPy/science-ai-mcp-server/badges/score.svg)](https://glama.ai/mcp/servers/SelfPy/science-ai-mcp-server) 📇 ☁️ - Academic peer-review and research workflow tools from [Science AI Journal](https://scienceaijournal.com): Pre-Check (paper-tier prediction), AI multi-agent peer review, Research Gaps Finder, Journal Recommender (1,214 venues with predatory-journal flags), Duplicate Publication Checker (CrossRef/arXiv/medRxiv/bioRxiv/Unpaywall/900k-paper library), and the Article Writer pipeline. Free local tools (FTS5, zero LLM cost); LLM tools use caller account credits. ### 🔎 end to end RAG platforms