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Trying to solve the generated file case issue manually

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docs/README.agents.md
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# 🤖 Custom Agents
Custom agents for GitHub Copilot, making it easy for users and organizations to "specialize" their Copilot coding agent (CCA) through simple file-based configuration.
### How to Use Custom Agents
**To Install:**
- Click the **VS Code** or **VS Code Insiders** install button for the agent you want to use
- Download the `*.agent.md` file and add it to your repository
**MCP Server Setup:**
- Each agent may require one or more MCP servers to function
- Click the MCP server to view it on the GitHub MCP registry
- Follow the guide on how to add the MCP server to your repository
**To Activate/Use:**
- Access installed agents through the VS Code Chat interface, assign them in CCA, or through Copilot CLI (coming soon)
- Agents will have access to tools from configured MCP servers
- Follow agent-specific instructions for optimal usage

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docs/README.collections.md
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| [Azure & Cloud Development](../collections/azure-cloud-development.md) | Comprehensive Azure cloud development tools including Infrastructure as Code, serverless functions, architecture patterns, and cost optimization for building scalable cloud applications. | 18 items | azure, cloud, infrastructure, bicep, terraform, serverless, architecture, devops |
| [C# .NET Development](../collections/csharp-dotnet-development.md) | Essential prompts, instructions, and chat modes for C# and .NET development including testing, documentation, and best practices. | 8 items | csharp, dotnet, aspnet, testing |
| [C# MCP Server Development](../collections/csharp-mcp-development.md) | Complete toolkit for building Model Context Protocol (MCP) servers in C# using the official SDK. Includes instructions for best practices, a prompt for generating servers, and an expert chat mode for guidance. | 3 items | csharp, mcp, model-context-protocol, dotnet, server-development |
| [CAST Imaging Agents](../collections/cast-imaging.md) | A comprehensive collection of specialized agents for software analysis, impact assessment, structural quality advisories, and architectural review using CAST Imaging. | 3 items | cast imaging, software analysis, architecture, quality, impact analysis, devops |
| [CAST Imaging Agents](../collections/cast-imaging.md) | A comprehensive collection of specialized agents for software analysis, impact assessment, structural quality advisories, and architectural review using CAST Imaging. | 3 items | cast-imaging, software-analysis, architecture, quality, impact-analysis, devops |
| [Clojure Interactive Programming](../collections/clojure-interactive-programming.md) | Tools for REPL-first Clojure workflows featuring Clojure instructions, the interactive programming chat mode and supporting guidance. | 3 items | clojure, repl, interactive-programming |
| [Database & Data Management](../collections/database-data-management.md) | Database administration, SQL optimization, and data management tools for PostgreSQL, SQL Server, and general database development best practices. | 8 items | database, sql, postgresql, sql-server, dba, optimization, queries, data-management |
| [Dataverse SDK for Python](../collections/dataverse-sdk-for-python.md) | Comprehensive collection for building production-ready Python integrations with Microsoft Dataverse. Includes official documentation, best practices, advanced features, file operations, and code generation prompts. | 17 items | dataverse, python, integration, sdk |